Scaffold Ga0208975_1000612

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1000612
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16664
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (19.05%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F042335	Metagenome	158	N
F048800	Metagenome / Metatranscriptome	147	Y
F056542	Metagenome / Metatranscriptome	137	Y
F097170	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100061214	F097170	N/A	MPTQGSVFDGFTSIIAQDADTHPSYLPESFVSESVNRTFRGGINRTRPSIRNIQIIAGSGQSETIVNDIEGGSFQGAYSYRSTNYDTSDGLIVSISGKIYFLKIENNLAYAYILPTITTWTWNDPGQMHTWFVQAEDWLYIQNGYNLPIAWNGNLNTNALRLNPFQGEMPIGTIMEYAFGRVFVSDKFNNIYASDIIYGNGFTDTSNTKNFTEIIYWSGGGSFATPAMMGNITGMKVMPEIGLNLRGQGQLVVLTSNGAFSMDVSLPRSQWTVSNIQRISLIGRGCVSPYVGLANSELWFRSHDGWAFYSNTQSEFNRYFSLRKLSREVNKWVQNDTPWLKQFASTLFINNYLISTVAPQTYRAEGVEGLNRFHRGMIVLDLDQASSASPDAQLSFRWNGIWTGFRPTQLMFAFIKGEKRGFGFSFDKDNKNRLYEFTISQTEDFGPNGTTKIESFFTTGRYDFSKSGLTNKFLRKKLTGGEIWLSEIKGDVENSVDFRADSNPCWSELKIPTTYGCDPCSPEVTECIPQKGGNRYKRYKFNTPDPSECNDLAGIPAVEGSEFQIKVNLTGAATVDRVRLMANIKNSEDSPVGDCPEENEECEPFLCCQEKYWEYSIV
Ga0208975_100061215	F048800	N/A	MDNQDSSASLTFPNVPDDFCPSGNWQNVFQALIDDVLSNGTINVPGLGDVTPEQIALLSQQVAILTDQVSDIAGDQATLTTQVNAIPIVKVRSGTITTVVAGDSIRTVIFDALPNANYGISITPLCNATILIQPTPLFALVTGSKTTTGFSIRIENNIAEITSVDWMAVHTS
Ga0208975_100061216	F056542	N/A	MTVLNGTDPKLVSGGSATRGKIGTPMGNMNPPNTGKNPYSSAPLPKSGKPVGGK
Ga0208975_100061217	F014513	N/A	MADTLEEMVELVKGFVGDSGTCSYERGVKAVNQARRLLWNKRAWTTQEEYVQICCVNKCFALPSRYEQIKLAWIGNEVASLADEWFNATNAFALRPEQSCHRGITEVGGLHVLFRDYTTNPYQIGVMAEEAEDIGIELMFEAQDQYDTYHKVNVTTANPPTLAKSDLLVKGIRSVSKPVTKGRIRVYAYDASLETKTLIAIYQPNDAHPSFRRFTVPRTCECITLYASKKYFDVIHPKELIEFTPDAMIYAVLALNSRENRKAQEYMQNLALAVQEQENEMAGVEIPTAAPIRFSNYSRAENIIGSDLLSPSADDYFLYQ
Ga0208975_10006124	F042335	N/A	MSDNTTSHGVLGTIISTTGFIISMLPEIEASIRIGGGIISIIAGVLTCIYMTKQIMKK