Scaffold Ga0208975

Basic Information
Taxon OID	3300027659 Open in IMG/M
Scaffold ID	Ga0208975_1000591 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027659 Open in IMG/M

Scaffold ID

Ga0208975_1000591 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16952
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (28.57%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

16952

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (28.57%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.701094	Long. (^o)	-82.854085	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.701094

Long. (^o)

-82.854085

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006936	Metagenome / Metatranscriptome	361	N
F011668	Metagenome / Metatranscriptome	288	Y
F014504	Metagenome / Metatranscriptome	262	N
F025459	Metagenome	201	N
F034182	Metagenome / Metatranscriptome	175	Y
F034928	Metagenome / Metatranscriptome	173	Y
F048162	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100059111	F048162	N/A	LKKKRQPTVESERAEALAEAKRILSEHYDCGLTIVSWEQGGETLHGEFVFGNKYAVEGLAGDSFSILFPDLEEEEEEDEA
Ga0208975_100059112	F025459	AGGAGG	MKMTLEFDETERYEHEVACKALDILILVDDIDQELRSALKHECGEFAKLDVETMEAVRAWIWQQRSDRNIPELK
Ga0208975_100059122	F034928	AGGA	MQWRGYPLRCWPNHQDDCYRWDWEVQIDGTWVEVVTQATRWIEDEAEETLQRYLTNRVK
Ga0208975_100059126	F014504	N/A	MHDQRDAAEYDEASYTPDFYSFDDPTAGHAFRMTAYREASEKLLVVLNKTISFLAEHGYSRSKTLWGVAFALGHPLTAGMSMLEAGRELGCTKQAISKIAMDFLDTTGLPPSTSLKSEEARNTYRKTNTNKYGTKRNNGTHPAGN
Ga0208975_100059127	F006936	N/A	MEPNEITALTLPVIETEIRAAYAEANALAVTAKGNARAAVLRMADCGQMLMVAKDHVRGNRNEWLASLGIDPDKAAKAIHLARNRDQLELDLWPADMAKLGAQMLGILPPPGSAGREENDPERTTGASTHWLTYAGKLQRSFTDLFTRKPVDQWRADERESLRISLKPIVDIYNKLN
Ga0208975_10005917	F034182	N/A	MESHTFHSLVGTSAPAAAVLISFSEVEAWLRILSLLMGICIGAISLYKMTRPKKQ
Ga0208975_10005919	F011668	AGGA	MNAKSIALWMIVLSFAFLGMAFLTSCSGMNNPSLCIKTDYGTFCYTPEFSKTLHDK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208975_1000591

Overview

Ecosystem & Geography

Associated Families

Sequences