Scaffold Ga0208975_1000428

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1000428
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20871
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (78.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004450	Metagenome	437	Y
F011669	Metagenome	288	Y
F018002	Metagenome / Metatranscriptome	237	N
F034044	Metagenome	175	Y
F039482	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100042827	F018002	AGCAG	VSLEAQFSAHEAVCAERYDQINARLKRLEGILIKTAGVLIFSMSAIVYASLTLHR
Ga0208975_10004284	F004450	N/A	MNWLAAGLIALVMSAAYLLDGPSEHDARVDTAEEKIQKLCGENAGWKLLDDGSIQCFTHRGFKTKKVTL
Ga0208975_10004285	F039482	AGAAGG	MSDRMELTEHTVFILNGIKLLPHYTLPVFVTPGHTKDTPMKLWTVEQLKDAGAVQSSAFLWTRHTLAAGGWHG
Ga0208975_10004286	F011669	AGGGGG	MDDNDDYELANWMHLIATCILALFALVGVAGLAGFIWGML
Ga0208975_10004288	F034044	GGAG	MSRDDIIRMADASGLSFYGMGKDREKFIYYLEAFAALVAGHERKACAIVAENKEAWYDDSRGIAKAIRARSNK