Scaffold Ga0208975_1000176

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1000176
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34441
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (81.48%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000220	Metagenome / Metatranscriptome	1544	Y
F016520	Metagenome	246	Y
F040586	Metagenome	161	N
F041187	Metagenome	160	Y
F091625	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100017611	F000220	N/A	VLLTNVVGEQATWTMSDEKPSDILSKVLSYVDSPFKLFALILMAVFAFSGYFVWQNQELLMGAYKESKKMPSIVEDRVEDAAAHLFKTTNATIVAVFKVNPMFGTRVLYRAYTKEGRDKINDGLDVGLFTQNSANNADVVKLMASEIPCGEYKSAQSEMGLWYIAKGVVYTCRISIPPDPSRFVGQITVGWDNQPADIEVAKTMMEIAATMLSRSKQ
Ga0208975_100017614	F041187	AGGA	VSNKPDFATWNQANLAKFAEEAYAKLCEQDDRIQHLQCDLKTAIEAYRAVTKQTP
Ga0208975_100017616	F040586	N/A	MILQELGGAEWLRKQLDKNAKMPAKYYRRELDAPSKKETND
Ga0208975_100017619	F091625	GAGG	MNTPPIDHITLRDFFAAAALTGLLSNGDRKSAVENAYAMADKMLLERDDDPA
Ga0208975_100017624	F016520	GGTGG	MNLTPACPRGLTEYACEVEGVDLVCFLEYTPSENVGRDSYGLPSEPGTFENLELVNAYVKGTDVDIGHLLLQYLVDHITTTALEDYKNDDL