Scaffold Ga0208975

Basic Information
Taxon OID	3300027659 Open in IMG/M
Scaffold ID	Ga0208975_1000143 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027659 Open in IMG/M

Scaffold ID

Ga0208975_1000143 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37163
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (21.05%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

37163

Total Scaffold Genes

57 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (21.05%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.701094	Long. (^o)	-82.854085	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.701094

Long. (^o)

-82.854085

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008495	Metagenome / Metatranscriptome	332	N
F009267	Metagenome / Metatranscriptome	320	N
F011222	Metagenome / Metatranscriptome	293	N
F018136	Metagenome / Metatranscriptome	236	N
F020694	Metagenome / Metatranscriptome	222	N
F034928	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100014334	F009267	N/A	MKKTKNNELQKDDEILRIQAMEDGPKKVNGHLLRPITALTISWMQRNEVFSGDMDLVWKSAAFAYLHSEPYSAIRSVVNDRSAFINAVDSWIEKNMIHHLEISAMTSAMNAAFEFYNASATQSKEGSGSGN
Ga0208975_100014335	F011222	AGGA	MEPNKKFFHTINLKAAVALATLGFKMNKPPITRLVRTDGKESTEFWFEGENNKGEEASKVYRQMTKEGDELEESDPENPICYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASEKTKKEMTRFLK
Ga0208975_100014337	F018136	N/A	MITDSTYTLTLEKALTDAFILALQQEMQGSLVVTAAENFGTITLPACFVKCTRQRESIINSAIFEFNVDISLVVQADDSDQMAFENLWSQVLCISHDIFGLKTKINSIRPQYAFVFGILRDGAVSFSTTDRHFERSVTITAHASLFAS
Ga0208975_100014339	F020694	N/A	VGLLDIFTSDLCAVLNELPMAVTFGGRDFLANRTTYRRENTLGDGGFMNTAAMTITAIYDSQTQTISLGDILVIGGRKFRVLAADLSQDAVSVDFTLEDINK
Ga0208975_100014340	F008495	N/A	LKILIVYHLRLGDIARCLPIAKYFADKGNKVWFECLPEYHGLFELVDYCTPLYPQNSRNDFDRVIDLQIWPDLHQEFCQSEKNWSDFVYDLLPEGKDINRQIVLNSPSIITPPELKSWVLCFPTGYSQDKKIHPAEVIQAAHQIANGRPVLCAGKAAHGMREFESIEYMCAYIRDAQEVVTINTSSSILASALRKNWIHISDSPKHDFFHPNQSRIERKF
Ga0208975_10001435	F034928	AGG	MNNPRQQSWRGYSLRCWPNHQDDCYRWDWEVKIGEEWVEVVTQSTRWIEEEAEESLQRYLKRQQK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208975_1000143

Overview

Ecosystem & Geography

Associated Families

Sequences