Scaffold Ga0208975_1000104

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1000104
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41941
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (19.70%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008165	Metagenome / Metatranscriptome	338	Y
F050993	Metagenome / Metatranscriptome	144	Y
F066587	Metagenome / Metatranscriptome	126	Y
F074877	Metagenome	119	N
F095368	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100010419	F050993	N/A	MRVIRINTTAWMEEDFYLLTTLDDDQIAEVIQPIVNAERDGEEYYDNYILLQALKDRFPMEYADMYTEFDKLIF
Ga0208975_100010426	F066587	N/A	MNERMNNIGFHKTDGYIREITIREQLNRNINLVGINDIKHPIHGIIDVDRDKLEDLLKFTEEELRDMSPEEFM
Ga0208975_10001045	F008165	GGAG	MKDNKYLGSWDLEVNGKYEPKVVTIERIYQDVFVGEMGKEDKVFVKLKEFDKPMICNRSNFKRLETFFNSFNAEDYVGKQIVMMTEKVKSPQGLVDALRFSVRPLPKKELPTLTADQMTKAIEALESGRTTIDKINKAYTITNEQMEILNEIKN
Ga0208975_100010461	F095368	N/A	MNRKFLQFTIGAANALERKLFSANADYFIAMPSTSTLTLHAYAAHAASDLITITFTTADATYASHYAVIDALASANSSSSNPDAIIVPALPMVGATQQLITSITFA
Ga0208975_10001049	F074877	GGA	MTAIILAYMLELKDEYEEMVSEFGYKDQSTQRLQTKYTTLLTLIEKLKLE