Scaffold Ga0208975_1000080

Overview

Basic Information

• Taxon OID: 3300027659
• Scaffold ID: Ga0208975_1000080
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46635
• Total Scaffold Genes: 110
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 87 (79.09%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008496	Metagenome / Metatranscriptome	332	Y
F009144	Metagenome / Metatranscriptome	322	Y
F032097	Metagenome	181	Y
F072347	Metagenome	121	Y
F078715	Metagenome	116	N
F081267	Metagenome	114	N
F098314	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_100008032	F032097	GGAG	MEFELYHEKDAGPIVRWFANKMLSILHKVEKPLYDYADMYTAVWDDYEDEDNLSVPHNQMGIFDNLEPLPQFERLAEDLI
Ga0208975_100008043	F009144	AGGAG	MFKEIDYNKHFVIGTPLVGWKADMGEEMSWIENSKQIIEKFPNAKFFTALELDGRGLEPFERVLNALKEINGDFWTYTVNDMESTVTSSNRWIRIETGRNLIREFAQRLRKTSGHHWGEDCTEENIGVVNYDAILYVDSDIVLTAELIEKLFEVDHPIVSADVPAYGLRGKAVSDNPRIEEHWNTAGMLLVNSPAFYDLPWYHNSYLNLSDDPTFQSMAERLKVRVGLENLDHTYGMTWVRKDIKAEHKGELLAVENRRIPPRNI
Ga0208975_100008044	F078715	N/A	MHKKFLSSIFSVLLVFSQATPASASDSIRYKTEKSQTIKKGKWTTINFNGKTSIQGNGKRSLFCYQVVLNTKGKKKPKYVKVRMVRVGSGKNNATATNTYFFTSKPDKKFVASQCWTILTEHPIVLQVRISGGSKTYQTDISQFKMWTPGGDYPQDFSDFIPETTIN
Ga0208975_100008046	F098314	GGAGG	MKKWLKDKFRETLNQTFTLLGMFVAWAVLDGSAKTVVGWAIMLCVVVWLFSMKFREEKEEEENGKK
Ga0208975_100008066	F072347	AGGA	MDNRTKAEILVQFTQDEFNSGEYEEFFDYNDLGIPLSIAIVQDMVILTDSGEELLEETWKDLCLLFDANPDNEYETIDDLTTK
Ga0208975_100008073	F081267	AGGAG	MSYQHHWVVVYDEDWGAFMVDAETTNVMLEEGDGTIYNKTTGHWEFAEEGSEELAEYQRLEEILAYNLTRLDLTKKV
Ga0208975_100008080	F008496	AGGAG	VDFPIPATITPMSEQVAVTPAYDPKATILVRKGYYYGTPSDSKFDLENADDISRTYWRLDALQETNNRNSRAQDKLKDYLVENFDEIGEEHATEIANIFGIDLSKEVEVEFNVTIKATVSMPVNEDVSDLSIYDFDITIESNESKYEIQEFDADIDSIDERY