Scaffold Ga0209357_1093112

Overview

Basic Information

• Taxon OID: 3300027656
• Scaffold ID: Ga0209357_1093112
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 864
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002287	Metagenome / Metatranscriptome	574	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209357_10931121	F000710	N/A	MASVNMISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIIFSSSTSAAPATLVNALQLRVTLTINNDVVIDDVVAHDLGASATSGITSGFPNFIPFPRALTGQDTILLRVTNS
Ga0209357_10931122	F002287	N/A	FNTIEAPGTTSSLTFFRSFQGLTNGQTNLTQNKLDSMESMVIKTIWLAQLDTSGALGFFGGLVQQTVSIIVGNQTVVKNLPIQFNQGLNGQAYDRLHENGGTGLDRNIPPTDTFQTNIPCEIRLLTDIVIPPQVAFEVRIDSNAGAYGTGAVVCALAGYGKIFSAGNSF