Scaffold Ga0209357_1010724

Overview

Basic Information

• Taxon OID: 3300027656
• Scaffold ID: Ga0209357_1010724
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3396
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008808	Metagenome	327	Y
F009064	Metagenome / Metatranscriptome	323	Y
F052382	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209357_10107242	F009064	N/A	MIIELSKDEVRVCTMLAVERWLTKFGSTDQPNYAQGKADGKLEPEINANIRANVCEWAVAKHYNLAWNNPWYPNALHKKRYPLPDVGENLEVRSIRTQDNIPFWGKDKGKVIVGTKCLDLEYFSKVEIFGVAYPEEFMKPEYYDKYINGWRIPIDGFTHE
Ga0209357_10107243	F052382	N/A	MGSHMSSYGKRKGATFETSVVKWLRLKDILAERLTKAGAKDEGDVVAFLDGAANILELKATKKLDLPQFWREAEVEAENYAKARGLKEVPYKFVVVKRRQAGIDKAWVVEDFEQWTKRAG
Ga0209357_10107245	F008808	AGG	MDNKVPPCPECGEQFDNVFQATDHLLEDDEEFDPSLILPNGARLMIGSLLRCLYKYANQPEQVKIITQSTYMTLFTAETQPEAIKDIVEEMIIKSQMMEIDDELKQLLEGGQ