Scaffold Ga0209388_1000358

Overview

Basic Information

• Taxon OID: 3300027655
• Scaffold ID: Ga0209388_1000358
• Source Dataset Name: Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9669
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: Eel River Critical Zone Observatory, California, USA
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001571	Metagenome / Metatranscriptome	669	Y
F011479	Metagenome / Metatranscriptome	290	Y
F017116	Metagenome	242	Y
F020766	Metagenome / Metatranscriptome	222	Y
F034511	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209388_10003582	F034511	GGA	MGAGTASWVYTTRALGGFGLGNLIQWNASASVLLLPISIPLLIGGVGLCTYFLAMRRTWRASNRIESALYELEALVGQKSGVAGPLLGVGVIPEAKRGGNRSIHLPSFNLGSKALGVALVEAVLLIIIYGGLVREYASNVNMQNWVQANFAPGTYLLNYNAVLVLAGLLGVLIFQLLPRKFQAKKVKAGPSI
Ga0209388_10003583	F001571	GAG	MSGPVIDKRLALIHRIIVPDKEYPKEYGILVTDSRSIFIRQKKTRSSYWLRGEMRFGTALVTDVIPKTLEDFEQTGLESLTADPANITVPHEAVVSLVMGKEEPEFRAREFFVWLTMRRQGHRFQVYNFQMKYQHSQKLEPLIKFYMVPLGAYFKPERQTKSRETILREYATDALGIFQKVLPAKIISS
Ga0209388_10003584	F020766	AGG	MDLVTGGIALFTIMVAAGIIPLIMAIKVKVRGLRVLSLLLGLFAVVHGFYHLAFGFQQELLADAVFEPISLLLLIGLGTYYSKVGIA
Ga0209388_10003585	F017116	GGA	LASDPIITLFETFNLVLILIAFAIFARLAFKGKSLGSFRFQLSIFLLIWVISEIPHIGESIGFLTVGAYEDTGLYLHAASMAVFAIFVGWRSLRFLSFHPPPPLSTVSLPAQTPRVLKS
Ga0209388_10003586	F011479	AGG	MSAVSFDDLVSQSVSETMSKILGATTWKSVNFFFDTKTAAREPEAFAALLDKVFGFTSKVLQKKIAETLLNKVGAVQPSNTLDFRQILRLAKAKFPRTTLSGQIG