Scaffold Ga0209799_1008274

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209799_1008274

Scaffold Ga0209799_1008274

Overview

Basic Information
Taxon OID	3300027654 Open in IMG/M
Scaffold ID	Ga0209799_1008274 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2201
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama: Oeste
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000998	Metagenome / Metatranscriptome	810	Y
F072062	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209799_10082742	F072062	AGTAGG	MLLAFRSFHSSVFLQAISIVCVIVAFSYIFFEVLDLDGSSLPLQRFPVENTVIVPELETNLGRPCLTRLALPWSDISFFLLPEHVDCVRLHRIENFKASAFNSLQRHNYRVALPRSSVPDHL
Ga0209799_10082743	F000998	AGGAG	MFIETYYDDRAPVPGSTSEPIIPYPELSGEQLTVWRNYLPMRREIRNLYSRFNAIPDLAIEEIKKAKRSFDRIEIWSRAGDPIAVGVIEGENPRYFSIARWGDAKLTLAQVKRRLWFNKWLLLLTATGGIGFFALTLAAIPHGG

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