Scaffold Ga0209007_1000135

Overview

Basic Information

• Taxon OID: 3300027652
• Scaffold ID: Ga0209007_1000135
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42910
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (62.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000838	Metagenome / Metatranscriptome	866	Y
F009411	Metagenome / Metatranscriptome	318	Y
F024747	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209007_10001351	F000838	N/A	MAGRAIRISSRIAFLLCGLISLLTAVPYAGMQGEDLPVQSEWIVFVVVLALAGVFNVTLTFLPRSWIARICRKDRDDERLFSLPLKLLGIFAAIFYVLALFAYFAPHSWNLNPQLMLLLCPMYVVRMTIDPPPVAIFLLLAPMNAAVYGAIGASLGYVVLTFPRKVVGGSP
Ga0209007_100013518	F009411	AGGAG	MSNDESRKQMGIVRLTSDLRAAKIELLSAECAADRLRLQYSVEDIVSFGERQALRGAIASAGALCRFFSSIEDQLKQAEQRE
Ga0209007_10001353	F024747	N/A	MAYFPPRRAPRAPRTRFSEMTPAVLRCQDGHRIRGKLQSISLSGGLLGVPKPLDRGTHVKLMFLTGSGSVLGVAEMLSPITWSLQPFKFVKLYDDDEIRLQAAIQLSLDRTRRTLGQLESYSSSW