Scaffold Ga0209007_1000033

Overview

Basic Information

• Taxon OID: 3300027652
• Scaffold ID: Ga0209007_1000033
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 101320
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 69 (83.13%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002165	Metagenome / Metatranscriptome	588	Y
F003631	Metagenome / Metatranscriptome	476	Y
F004157	Metagenome / Metatranscriptome	450	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209007_10000332	F002165	GGA	MADTSEERVEDIVARQALEIERMRDAFALLGVNPCAWCKKYVRRSDPGAMFDAGELICYACIREWWPQRSAQLSGKEHENLEGKLVFWLRDYHRAETFKDPAKLPESSLQELNIVANCLECHGTGKSLGEDNCRFCDGRGTVWVIVSRKKA
Ga0209007_10000336	F003631	N/A	MELLLNLAWVLLALPAYWLWRRDAGARPSRRMSSLQCSLALGCVLVLLFPVISASDDLHAMRAEMEESATSKRAVRQAGSEKNSAGVNRLQGPPALVANVVWVVAPEIGLLKVSVASVVLPTTPGVAYAGRAPPRSLLG
Ga0209007_10000337	F004157	GAG	MGMGLAAEAQTATPAATDPAAPDDDKDGLVIGPAELPGTYPQGAYQFVFYARGNYVPVLHWRVESGALPPGIKLDDNGALHGAAQRAGEFQFTVSVKDGGQPQQAVQKVFTIKVVDAITVAWKDPAHVTANRIDGSVEVTNTTADDIDLTFDVKAVAENGRATEIGYQRFPLKKGTVGMTLPFGETLPHGGYMVYVNVVGEIAKRNAIYREQMKTPVLQVVVGP