Scaffold Ga0209007

Basic Information
Taxon OID	3300027652 Open in IMG/M
Scaffold ID	Ga0209007_1000023 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027652 Open in IMG/M

Scaffold ID

Ga0209007_1000023 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	118994
Total Scaffold Genes	116 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	83 (71.55%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

118994

Total Scaffold Genes

116 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

83 (71.55%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Algoma, Ontario, Canada
Coordinates	Lat. (^o)	46.42	Long. (^o)	-83.37	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Algoma, Ontario, Canada

Coordinates

Lat. (^o)

46.42

Long. (^o)

-83.37

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000249	Metagenome / Metatranscriptome	1459	Y
F000426	Metagenome / Metatranscriptome	1154	Y
F001709	Metagenome / Metatranscriptome	648	Y
F003629	Metagenome / Metatranscriptome	476	Y
F017346	Metagenome / Metatranscriptome	241	Y
F019610	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209007_1000023110	F017346	N/A	MGLFDAFRKDEVTGTKVLVGQLGTKFDEHLKSDLRVYKRFYPAATSAAFTTIAELRGAVVHKYDVLHLFCDVGNDGVISDASGDCISGAELLKAAVDADVKLLWIGNDNLQEAYDAGFKTKGMKINVVLTLRRLGSNTSLFLDNLLTKMTAGETLAKAWSVASSPEGKSVQPDVPHTISSLGRGSVVLR
Ga0209007_1000023112	F019610	GAGG	MRAFLANLTPKARMLLTIPLILIAYPVVTILIPALIRAAVPDVVRSVLNLL
Ga0209007_100002319	F003629	AGAAG	MKSDRLLNRRVIFKLHGMDPLDATVLKQDATGYWIRGGTLAGKLDESRCSLPESDVRYLEFCQIEWMRAPRGR
Ga0209007_100002368	F000426	AGGGGG	MKDIHEVLRQKQAKYAALGKQIEMLQQAAEKLREVAPLLAENDDEDNAVLAEVDDASPSDAMAAKAGAGGSGATASKGARPTAPRWP
Ga0209007_100002392	F000249	GGAGG	MKTLAWILVCPVLISALAAAQTAPPASDRVQNERIENDNEDRMFFPHDMFYGWGELDLAPPHNEIDPNLCAGNAGQYGGVNAPCSMFARYMLSGMLEVRPFGRGQLRRFMVFGAPSFLFGKTVPQTLYTWSPDAIGVEHSWGGSVYIAKGFEFRVTQHFLFDRLGARDTNLGVADLGNNGPWGRYMTVGVRKYFGTRRW
Ga0209007_100002393	F001709	GGAG	MPQEVSVSYQAIKSKVYRLIDALVVGEKSEADVQESIRRWWDLIHPADRPIAQKYLLAVLEHSHLAVDAIEEGLMDATDQDAVRPSGSPRSMRLIRIVKQTTRHSLSTTA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209007_1000023

Overview

Ecosystem & Geography

Associated Families

Sequences