Scaffold Ga0209007_1000014

Overview

Basic Information

• Taxon OID: 3300027652
• Scaffold ID: Ga0209007_1000014
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 181759
• Total Scaffold Genes: 170
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 125 (73.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005311	Metagenome / Metatranscriptome	405	Y
F008092	Metagenome / Metatranscriptome	339	Y
F008209	Metagenome / Metatranscriptome	337	Y
F018412	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209007_1000014117	F008092	AGGAG	MTTIPSTTIITNLKSVTLSTANTLKNANTNGIDMAGMLALALSKAAELKVCLSLIVRSTDTADANLTALNDILASLT
Ga0209007_1000014122	F005311	N/A	MLLEVANGGIMGSGICGAALVRAANAMLTALGGDQVSLLLPATAMASDVGGQLGLVDPGVQSIIIAPVVACNLPTGNAGPTRRIEFTLPASAIDVQLPVLGMGSAEELFDAALGLLYDGDLFHIEVVVTENFAGTAYFYVVTAVE
Ga0209007_1000014135	F018412	AGGAG	MSSAIDPEAAIPSVPQAFEQSDRNPPVTNWGGTDAEGGQVPAPAASESRVTPPGPAPSPNAGLQNYDTGDSVDQVQDEAEREG
Ga0209007_100001414	F008209	AGGAG	VKKALLVVAAALLFLNTLVIPTVAHADGGPLGGTCSGSSACKP