Scaffold Ga0209007_1000005

Overview

Basic Information

• Taxon OID: 3300027652
• Scaffold ID: Ga0209007_1000005
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 242941
• Total Scaffold Genes: 221
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 158 (71.49%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000238	Metagenome / Metatranscriptome	1494	Y
F000359	Metagenome / Metatranscriptome	1236	Y
F000912	Metagenome / Metatranscriptome	839	Y
F001885	Metagenome / Metatranscriptome	622	Y
F002692	Metagenome / Metatranscriptome	536	Y
F004330	Metagenome / Metatranscriptome	443	Y
F023648	Metagenome / Metatranscriptome	209	Y
F049124	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209007_1000005107	F002692	GGA	MSRLAVALIAYLVLGALAFATLGDFRIRSLTLLILGLFAFKSWVRRKEVLHPDRDGESE
Ga0209007_100000515	F000238	N/A	MPTPRPPRWYAIPVRVLLVTFIGALLTFAVSLLLGIVGTVVISFLRHTQPNMTVAYRLIALPAALVAGAIIFVLALTMEIRHYRQSKTLAAIARVS
Ga0209007_1000005150	F049124	N/A	MERPASVTVISALFFLIAAYLIAIGIIEFVAPGTLSMTLGAGVTYGRELDGPQTALSVGAGWGLIGWGLYRLRNWARWCAMALMVIGVAGSVPAVSAAARDITWRFFFYGFQIMLRVVIAWYLVASPEVVEAFVRK
Ga0209007_1000005172	F004330	GGA	MNEREPDAADANAGKPAADAGKAGRVLLSTFSRPPEARAEDVNSSILIAAESTAAYPGLKEAAQYFGPVTEIAEAQGFKIVNEPYEFVLGARTVVRGDFQKDVGARVMRQSTLVVLARGYALSFTFIGGTEDEVEELVEGLSFGAGTKARPH
Ga0209007_100000528	F023648	GAG	MAEWYGRRRVLARLTLLCAIAPVGAQAQSPAACQYVSFKVVLNAGDDFERELGGGLLFRVRSEKEQGWFLDIVPAEANTKDYIYPVNLPLRFNGNQTLGPGYGETVKSSLAHSHEMKFLLSRADYDRVFGLIGNVLWSYQTSDPDKALSDYMEAVDEAHKGSLLIHISSYKADPKSGALTRIKLRVEITTPASFQFAPHLNPFPWPCHP
Ga0209007_100000531	F000359	GGAG	MSGQVILYFEDQADALRFALAAGSVMAGDSDKVADDLIQETTRASRIRLDAANAGKTKKVTPEQAA
Ga0209007_100000537	F000912	GGA	MSLDAFVRCTCIRDGKAKPHPLPDRLAFDDSGEPMLTGDPTDDEWEAHDQWMTDSCEHGGYLLSVFLGNITRVGNLRSFLRALQGSPGPKFPILLEEVLYDGTHTGDWIPIKKSPALLKEVNTVLHSSDILAESEKEFFGSMKELCEASIATGNPIMF
Ga0209007_100000590	F001885	AGGA	VAIWEPLPNMEAPALATIRELNAIVSRKGYGRDLLYRSGESHYMLLRYWNSEEARRSALEDPDLLRCWARLGNEIQILKVYEKLEEVGL