Scaffold Ga0209007

Basic Information
Taxon OID	3300027652 Open in IMG/M
Scaffold ID	Ga0209007_1000003 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027652 Open in IMG/M

Scaffold ID

Ga0209007_1000003 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	261519
Total Scaffold Genes	244 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	177 (72.54%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

261519

Total Scaffold Genes

244 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

177 (72.54%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Algoma, Ontario, Canada
Coordinates	Lat. (^o)	46.42	Long. (^o)	-83.37	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Algoma, Ontario, Canada

Coordinates

Lat. (^o)

46.42

Long. (^o)

-83.37

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000901	Metagenome / Metatranscriptome	844	Y
F001772	Metagenome / Metatranscriptome	637	Y
F005244	Metagenome / Metatranscriptome	407	Y
F006150	Metagenome / Metatranscriptome	380	Y
F042194	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209007_1000003145	F042194	AGGAGG	MGSSVVVLESDPEVAQSLAGSLSSHFQSVHVTRSRDELRERVAQRRPEVVILDMEYSRLADVRHLHQDFPSVPIVCTYRVPDDELWIAAMEAGASDVCPADDVQTVLTSALRSLALAKTAVA
Ga0209007_1000003185	F005244	AGGA	MTMSIFDEKYRVVGVENDRLLVRGVHSGEVLTIVNPELATPLSKEEYPVGKLIALTDPSTIVPLN
Ga0209007_100000320	F000901	GGAG	MAANAAAAYGMYPQNAALSDIVHTLNKAGFDNEDICMMLSPTHPIASLVRDANLFNSERDSSAVTAGLIGWLSEFGAVMIPTVGFFIRSQAFFQAVMPSKEDTSLYGNARALVGLGFTEREAQRFENDVRHFGTLVYVSCRENAKSLWAREVLHNAGAQEAAILEESVAETLKVAAVA
Ga0209007_100000325	F006150	AGCAG	MERSRFWRIAAAGLAFSMMVTLCALAGGEASVDELKDRVSKASVEDRPPLCIHISERQLDNANKFYAAGDVAKWQAALVDVAAFAEQARDSAIQSRKHEKPSEIAVRKMARKLADHKHAVAHDDQKQVQETIDRLERVRDDLLAAMFRNGGKS
Ga0209007_100000350	F001772	AGGA	MRKNILLVFCGVSLVIAGYSFGSRNTTVAHASAPIPGTVPKSYGRLVTAISDQIGTGLIFEDADGVIRFVAMTGMKEGELARYDQTPTHGGIPKSYGHLVAAVANPTGTGLVFEDNQGVIRFVTITGKDEGELTRN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209007_1000003

Overview

Ecosystem & Geography

Associated Families

Sequences