NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209217_1010027

Scaffold Ga0209217_1010027


Overview

Basic Information
Taxon OID3300027651 Open in IMG/M
Scaffold IDGa0209217_1010027 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3105
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004003Metagenome457Y
F004186Metagenome449Y
F004349Metagenome / Metatranscriptome442Y

Sequences

Protein IDFamilyRBSSequence
Ga0209217_10100271F004186AGGTGGVNPRRALLLVAAAVLTAGCGIPTPAAPPSAKEVLAKPQQSNLKDAHFAVTGKITNNGVTVQLIGDGALVYKPKPAGRFKFQTTIDGQTLTIEEISLNGTNYGLTPASNKWVAQKSASGIDPNAFAGASDQKYVGEETLPQGKAWHASAKDKDGNAFDAYIRESDGYPIKYVETQSGGQNITLSFDHYNTGETIKAPPPDQIQSDNQPPTPALPRKGEGRFPPLS
Ga0209217_10100272F004003N/AMAKLLRFLTAIAAAGLLAGCGGPGSPLGPPSPQDILAKPAHTSSLKDAHFLVSGKFTDNAKTVALAGDGALVYTSGSGRFKFQTTVAGQQVSFEDISVNGTDYSMTIPGSGKWVARASASALGPNSFAGASNFKYVGEETLSQGKAWHASAKDKDGNPFDAWIRESDGYPLKYVITQQGNTLTLTFDKYNTGQTITPPPASQVVKG
Ga0209217_10100273F004349AGGMGDVKAKPRATLAVTVLMLAACGPTGNEAAKLPTASEILNKPDQANVKDAHFTLVAHIVSASVAFDATGDGAIVVKPAQASKFTMTTTIAGQSLKFEEIIIGGKEYDLAPDNPRWTVKASTSSNPSSFKGTDAVYLGEDTLKLGKAWHVKAKDASGSPFEAWVRESDGYPLKYASTTQGSTFTATFDQFNTGQTVTAPPPSDVQS
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