Scaffold Ga0209217_1007007

Overview

Basic Information

• Taxon OID: 3300027651
• Scaffold ID: Ga0209217_1007007
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3749
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002523	Metagenome / Metatranscriptome	552	Y
F011898	Metagenome / Metatranscriptome	286	Y
F029572	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209217_10070071	F002523	N/A	MLVIVSVSRLVDDRVEIRVAKPQHHSNAAQTYASEKEARAVLLGFGISPEAIDLHLKLLPQLGANERLNFPPMDVPQDELLSNGFR
Ga0209217_10070073	F011898	GGAG	MAKTMPLGSMRLRLESGEDSPAKEYRIEDGKVEVRTLDADGGSVRRTGSVWWQLTPEQLSIHVERNTVVAQWLERRLGWRRLLQACVGQEPTVWKAAENTSHPAL
Ga0209217_10070078	F029572	AGG	MPKRNLRVVKWLGQVPAIGVCTVCNREFKVPLTAMKRVADAQESLRHQFTEHKCNGEMAAETPSGD