Scaffold Ga0209217

Basic Information
Taxon OID	3300027651 Open in IMG/M
Scaffold ID	Ga0209217_1001162 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027651 Open in IMG/M

Scaffold ID

Ga0209217_1001162 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8257
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (45.45%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8257

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (45.45%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Algoma, Ontario, Canada
Coordinates	Lat. (^o)	46.42	Long. (^o)	-83.37	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Algoma, Ontario, Canada

Coordinates

Lat. (^o)

46.42

Long. (^o)

-83.37

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010345	Metagenome / Metatranscriptome	305	Y
F021735	Metagenome	217	Y
F046970	Metagenome / Metatranscriptome	150	Y
F082459	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209217_100116210	F082459	N/A	VRRPLLLAAALALASRAGVAVVSEPCAAQSGPQGPDDPRLREWLRALVHEVAREEGVDPYALEALGMTETTLRPALGRSCELGPFQVMPWWAEIFRLSSPELLWDPRINAIAAARIYKDAWRRWDERFAHAGRNRTLRAAGWRGRLDRFTFAALTYNWGKAPRAFAQASDLRFVAIPASAAAYALRFSVALREARERARADNDIPPGRSR
Ga0209217_10011625	F010345	GGAGG	MGLFARFWQYSIDTYGGAPMLLLINLIQVAVLGWVISQALRAQIDVAPGISSDARRIRAARRAEIWQKQVRPIALTMMLLGPGLGLGMSTLLGALGMGALGDAMGTQAGAEALAATMARAYREISYAYFLMVGGTFPMLLGPVIVLVARRLDDDGTDARGGDPDEVLLHTLKSLLAVTEAQARRAQVDAARTHTLLAETAAAIQRGEAA
Ga0209217_10011626	F021735	N/A	MLALLRDRRRSAPGERSTPSVSLPLRIHPARASALGWLPEPFALTLLVANGTFRQEDGALLAGQGGPVVAICAEYERPLTSLGPPALATYSLARARLQGMPTLRLAGGWFRAPLRLETTHRAARAASHRDEAVARAARFLEELKAAWQRRLGAVLEVAWPVYAPEHPGPLLDAVAGTALPELQLR
Ga0209217_10011629	F046970	GGAG	MNRTLLLVALAAAVPARAADEFKPIKASESVTYPLPPIPLPAAQPADGKWAETEDSPALRVSRAWVKLGQAAGVERSEATRRLYQAWKNEVAKDGTHGRVAQAAHAKFLAAYKKDLDQARSIYEGVLRDVDSLDADNPEGGTQGGEGSGGLAREAEEQIRSADRDERLTNSACFLSPDTCQQGDPADKALQDEISALVKGTLEAGGPDGGLSLYSLRRKAGLLALRARVMAAVTQRAAARLATEVATQQDGQGSPRSLPSPVAPAVSVARRGSPPAADPYR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209217_1001162

Overview

Ecosystem & Geography

Associated Families

Sequences