NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208960_1091557

Scaffold Ga0208960_1091557


Overview

Basic Information
Taxon OID3300027649 Open in IMG/M
Scaffold IDGa0208960_1091557 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)842
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023108Metagenome211Y
F045550Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0208960_10915571F045550N/AALVLASIEVMSINENYKVVKGIDLWQSAKLLFARAKEVKDDLNKLK
Ga0208960_10915573F023108N/AMAKLFIVIISILLYSCSSQYHLNKAIKKGYKCEETGDTIRITTLDSIPVIVNDTIVWEKFITQKDTVIKYNTVYVPKTRIELKREYKIKIKTIYKDKVV

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