NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208960_1023852

Scaffold Ga0208960_1023852


Overview

Basic Information
Taxon OID3300027649 Open in IMG/M
Scaffold IDGa0208960_1023852 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2318
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007798Metagenome / Metatranscriptome344Y
F019824Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0208960_10238526F007798AGGMKDTTLKQLVRDRKGQPRGMVVATVIDGSIRFGWSHTNTKAGDRFDKCKALTIALGRAENGWGPKTNVPASTIKILNKMIDRSVRYYKNVPVYGI
Ga0208960_10238527F019824N/AMDKYITDNFTGSIDDLLNHCTNLDIDKVEAQVKVEEKEACIQIIMKEANCDESEANDIYNEILLTETKTTVDKMVADGILYVSGHNEDGEPLFNLTELGKSVRNELNDNK

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