Scaffold Ga0208960_1003223

Overview

Basic Information

• Taxon OID: 3300027649
• Scaffold ID: Ga0208960_1003223
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8185
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.70%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F052406	Metagenome	142	Y
F053753	Metagenome / Metatranscriptome	140	Y
F076869	Metagenome / Metatranscriptome	117	N
F083778	Metagenome / Metatranscriptome	112	Y
F098653	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208960_10032231	F083778	AGG	MKKIDMGKYLLLIGKDATEVFDYYNVEEMHGLNRADAQAEEVDMTTPKDGDQGNGVYIYGLTNYDPADKKLIAKDPYKPFLFINLGTFKKYNITEKATGVMHETMHMSILLN
Ga0208960_100322311	F076869	N/A	MITLFMITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYTAEKLVSA
Ga0208960_100322314	F053753	N/A	MNHQLKFGYSQLGFNILVKINCKMSNQQAIELEKKFPEICIMQTRNGYRIEGSFNIKQNNVYVYTKFEDFKLTLALNLNDFKINKLIDANQALLKQGNLELSVANFDEL
Ga0208960_100322318	F098653	N/A	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYMFNNHTYSKWTNFNEGLLNKIRDYKKYN
Ga0208960_100322321	F000716	N/A	MEKFKQDLQNYQINSKTYVKYDTDGLNQYQNYLYKRALYGLSSLTEQELATMCSKKKQRIINVYKKAQIVLNKLKQDLTISYSNFIFKTLFPNSPITEYLLSDTETDTSFKNTLTFRDLDINKDKIITIFMSEGILPKNFLSLELPQNQLPRLKSK
Ga0208960_10032233	F052406	N/A	MKRVDIFSFLASDATELIKMQTKLNQWLTAKSLVKYEIHTAGEYIIFNVCRKKEQE