NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208960_1000163

Scaffold Ga0208960_1000163


Overview

Basic Information
Taxon OID3300027649 Open in IMG/M
Scaffold IDGa0208960_1000163 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36887
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (75.93%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006740Metagenome365Y
F007742Metagenome345Y
F030016Metagenome / Metatranscriptome186Y
F033355Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0208960_100016324F030016AGGAMSHNLQPIAKLNSREPKMSGGGMPDRNKETRSPTANCNATIPLGNNVKATVDKVLNKIK
Ga0208960_100016335F007742GGAMTYYTTKAAAQALADTLAAQDDDAWLYEVHASPRGFYVAVFDFDHFFLGNL
Ga0208960_100016336F033355AGGMIIIGKTTYKTARDGIMAHHAKCTGKHKPVKSKGAIKRFYPPHGASMTTAEYVAAYETLNKGLTAWGWQPLSTTLTVATGADSAWEVEDAASDF
Ga0208960_100016347F006740GAGMPAFDTWSQENLAKFAAEAYAKMQEQDERIQQLQNDLKTAINAYREMLK

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