Scaffold Ga0208960_1000163

Overview

Basic Information

• Taxon OID: 3300027649
• Scaffold ID: Ga0208960_1000163
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36887
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (75.93%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006740	Metagenome	365	Y
F007742	Metagenome	345	Y
F030016	Metagenome / Metatranscriptome	186	Y
F033355	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208960_100016324	F030016	AGGA	MSHNLQPIAKLNSREPKMSGGGMPDRNKETRSPTANCNATIPLGNNVKATVDKVLNKIK
Ga0208960_100016335	F007742	GGA	MTYYTTKAAAQALADTLAAQDDDAWLYEVHASPRGFYVAVFDFDHFFLGNL
Ga0208960_100016336	F033355	AGG	MIIIGKTTYKTARDGIMAHHAKCTGKHKPVKSKGAIKRFYPPHGASMTTAEYVAAYETLNKGLTAWGWQPLSTTLTVATGADSAWEVEDAASDF
Ga0208960_100016347	F006740	GAG	MPAFDTWSQENLAKFAAEAYAKMQEQDERIQQLQNDLKTAINAYREMLK