Basic Information | |
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Taxon OID | 3300027649 Open in IMG/M |
Scaffold ID | Ga0208960_1000163 Open in IMG/M |
Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 36887 |
Total Scaffold Genes | 54 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (75.93%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Great Lakes, Michigan, USA | |||||||
Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006740 | Metagenome | 365 | Y |
F007742 | Metagenome | 345 | Y |
F030016 | Metagenome / Metatranscriptome | 186 | Y |
F033355 | Metagenome | 177 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208960_100016324 | F030016 | AGGA | MSHNLQPIAKLNSREPKMSGGGMPDRNKETRSPTANCNATIPLGNNVKATVDKVLNKIK |
Ga0208960_100016335 | F007742 | GGA | MTYYTTKAAAQALADTLAAQDDDAWLYEVHASPRGFYVAVFDFDHFFLGNL |
Ga0208960_100016336 | F033355 | AGG | MIIIGKTTYKTARDGIMAHHAKCTGKHKPVKSKGAIKRFYPPHGASMTTAEYVAAYETLNKGLTAWGWQPLSTTLTVATGADSAWEVEDAASDF |
Ga0208960_100016347 | F006740 | GAG | MPAFDTWSQENLAKFAAEAYAKMQEQDERIQQLQNDLKTAINAYREMLK |
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