Scaffold Ga0209420_1000053

Overview

Basic Information

• Taxon OID: 3300027648
• Scaffold ID: Ga0209420_1000053
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 73458
• Total Scaffold Genes: 86
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (86.05%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001247	Metagenome / Metatranscriptome	737	Y
F001829	Metagenome / Metatranscriptome	629	Y
F003216	Metagenome / Metatranscriptome	500	Y
F004586	Metagenome / Metatranscriptome	432	Y
F029199	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209420_100005330	F004586	AGGAG	MTPIDQKKCGHLPCRCLVPANDKYCGQACREASSREVEIACQCNHGPCPLTA
Ga0209420_100005341	F001829	AGGA	MRKQYLHLSAYPCDVCAGPVVAGAVAVRENEISRETDIRQVGAICLSCGHRQSGPTEPARARHLPPIDWDPVSVSAAGHLTTAYLEAINRAELR
Ga0209420_100005356	F003216	N/A	MTLKSAALLALVGRVLMTALLVWTFVLTFPNVRRDLVPAVTLLQSFIYAFGCFSVAVFFYVFHRAQS
Ga0209420_100005369	F001247	GAGG	MKTKTWTVIANTGKQADLERGLEKREFRKPAHISPKEFVHWMAPASHITDDSLESIFRL
Ga0209420_100005370	F029199	GGAG	MELPPSGTTKRHSKRTKAVVPVRLWIAGTKDIHLAHTLDVSRQGVRLGGYRGDMKVGDKIEIQYHQNQAQFRIAWITASEGSLEKQIGAECLEPGKQVWGAQFPQQADQYEQK