Scaffold Ga0209466_1002910

Overview

Basic Information

• Taxon OID: 3300027646
• Scaffold ID: Ga0209466_1002910
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3527
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002554	Metagenome / Metatranscriptome	549	Y
F008729	Metagenome / Metatranscriptome	329	Y
F018679	Metagenome / Metatranscriptome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209466_10029101	F002554	N/A	VARVYIVSFRSIDDRRPSKFIVLADNMKSAINMAWEHGGGDFQSRFGKSTAQAEQMKEGVLRVL
Ga0209466_10029103	F018679	GGCGG	MKSAINMAWEHGGADFQSRFDKSTAQAQEMKEGALRVL
Ga0209466_10029104	F008729	GAGG	MVATIFFLASCSTPPVAFQNASHRQTYSLNVDDLKKLQFYISTDVVAQYQDATGTKSLLLTRLTPGVATDAGPNWIKVSFREGGVDVPFVADPNQYDARYWIATEVEGSKDFKRIYDLSDRFFLYKGIRYKVVSGADAVLFFDLAEWKRLVENRRVTEGRQVGDR