Scaffold Ga0209117

Basic Information
Taxon OID	3300027645 Open in IMG/M
Scaffold ID	Ga0209117_1001378 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027645 Open in IMG/M

Scaffold ID

Ga0209117_1001378 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8682
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8682

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (92.31%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Thunder Bay, Ontario, Canada

Coordinates

Lat. (^o)

49.08

Long. (^o)

-89.38

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006278	Metagenome / Metatranscriptome	377	Y
F006399	Metagenome / Metatranscriptome	374	Y
F010114	Metagenome / Metatranscriptome	308	Y
F046588	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209117_100137811	F004823	AGGAG	MYVTKAVNGVPAIQRDGQSVLRVCDQDWEFAEWLCALLNELGQKSELLLNEQDWEWLRAIDSPFRRTAQHA
Ga0209117_10013782	F046588	GAG	MTFLPTQTGFMRLEDSEKLLRAIFPNYPSLEPCHSAPRLEPIPQGSKDYWNAERMSLC
Ga0209117_10013786	F010114	GAGG	MIIEFNDDETRLLYNVLLEQAQEHFSYASTSEVAERLYKLATRFERPVRELPNITIA
Ga0209117_10013787	F001596	AGGAG	MSWFHSSTAAVDARNHASPVEIVACFQDQRNVLGRLAFLITSDQATADQAVVQACEITLQGNTPFRDWLLEWAKAATIASAISHGTEAIRICEAAYKDRRCPHVEHLSQGDAEERAASLDLILRTDVQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLGANCHALTWLHERHVKPVEENHGASPLCRNAGTGVE
Ga0209117_10013788	F006278	GAGG	MFRAEIQWLASGPTLKLEGKLVADWAEQARCLVTKELLPKGLIVDLTEVSYIDSAGEQLLKWLASVGALFVAGNVYAIAVCDRLRLSPMQRISERRKRRHGNIEERSSINHSHPVEAI
Ga0209117_10013789	F006399	GGA	MVTPALNSRVRSLVTEYGVFWQFWPQFEQTDGERRLVGFEVELIGSHTSDLNHVDPACPTCRHVRSVLLAIANLMPGELTLSRNSLTYNIDSHSNSIVCLPALGNRSAVWVSIYVFLNRANGQSFETDLLNEVKTFLNRWGIHQR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209117_1001378

Overview

Ecosystem & Geography

Associated Families

Sequences