Scaffold Ga0209117_1000140

Overview

Basic Information

• Taxon OID: 3300027645
• Scaffold ID: Ga0209117_1000140
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46375
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (65.12%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000743	Metagenome / Metatranscriptome	910	Y
F001355	Metagenome / Metatranscriptome	716	Y
F002672	Metagenome / Metatranscriptome	538	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209117_10001402	F000743	N/A	MTKAEKQRLSTVIRATEYLFLENIALKLVLEHRAVANWQKLLERLLEDKEMLAGVRLKFRDLYDQLEESADPSAALEALLRELPTPKKAQ
Ga0209117_100014021	F002672	AGGAG	MERIQAQFVGVELYFENLERARKFYIETMGLEVSDEQVGHHAKFDSGTGFVCLERKGAEAYPSKDKAVLFFQVPDLKSAIAAIGQDRLVQSEPTWGVLHDPEGHNILLLQRPH
Ga0209117_10001405	F001355	AGG	MDYAITKRSPCTVCGRDSFRRTGWFLVVENRWLDRLKILSWHSSLATQKDMKSVCCRQHLKTLVAHWLTQASLRLPPTHNPPLPIGSDPTVGDFDLGPHSMGRLLGELSVHRESFSRGWSGSPAALECILDALITVGDEDKPRGMEFQLFDLPTESSHELSLQ