Scaffold Ga0209117

Basic Information
Taxon OID	3300027645 Open in IMG/M
Scaffold ID	Ga0209117_1000078 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027645 Open in IMG/M

Scaffold ID

Ga0209117_1000078 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	70520
Total Scaffold Genes	68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	63 (92.65%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

70520

Total Scaffold Genes

68 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

63 (92.65%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Thunder Bay, Ontario, Canada

Coordinates

Lat. (^o)

49.08

Long. (^o)

-89.38

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003165	Metagenome / Metatranscriptome	504	Y
F004246	Metagenome / Metatranscriptome	447	Y
F011101	Metagenome / Metatranscriptome	295	Y
F025539	Metagenome / Metatranscriptome	201	Y
F085999	Metagenome / Metatranscriptome	111	Y
F095814	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209117_100007810	F085999	AGGA	MKTILKIRTVTCVVLAVGALLSTPGAVASDSDSYPSYLQAKVIAHLPLSGGARQMFLQQEGRRQFLYVQQPSQQGVTVIDITKPERPKVVNQVPLENLTTVSFGLAISETPENSATVGASLAAGNVEGPSGSGVLESVRVLDVSDPAHPRTVRNFDGVTSILQDSARNLLYVANGDGVWIVSHQQVLRSRECSSSDAISPLPNCD
Ga0209117_100007811	F011101	GGA	MKYRAITFASAAFFVTSLALASDTWILDSSRSKARLFQGSRANSESVNTGVARVTGKVKLDANDLDASVLDLSIYPADEEWEHALSPDGALPTGYVPDATDQTLLTFKSMRILRTGNGQLQVIGDLTLTRVERTVTARPTEDYAGPVYGDPVIHNETHEITFLFPSVSAAHLSGPLTPAMQQKRGVLEIVGSACIDHDEFPELLSAVKETNWPPVVRNKDCHMPSTVGEDYSGAVCTGTLIAATRDDNYQMPASVGEDYSGPQCTPATGNQTTIVLDLKFLHKVPEASVEAHSGKESSWNAAPVRLIGRSN
Ga0209117_100007812	F095814	GGAGG	MLESTVELLGGLLLSALILLVGACILGSIFAALRAVRRESDDEREEVKEIFAFGAEVTVLDDRMIKTGLIVMTSPENHYGL
Ga0209117_100007818	F004246	GGAGG	MLDDWDERDEVVAAGSICPVPDCGALVICCRPPDRTGRDNTKSWCEFTCPRCGTYFTVPEDELIFQSVPKEWLLARVQAA
Ga0209117_100007820	F003165	AGGAG	MAQVIEFYIPNNFRKPLKWAAQLQRGKVIEFCSQIKKSA
Ga0209117_10000786	F025539	AGGAGG	VSSNVHTALSRNDWTLDLVYDLPSQSLQGDPSIDDPVDDTGLGPRCGDLQVSGEFAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209117_1000078

Overview

Ecosystem & Geography

Associated Families

Sequences