Scaffold Ga0209117_1000059

Overview

Basic Information

• Taxon OID: 3300027645
• Scaffold ID: Ga0209117_1000059
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 90401
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002757	Metagenome / Metatranscriptome	532	Y
F005761	Metagenome / Metatranscriptome	391	Y
F014528	Metagenome / Metatranscriptome	262	Y
F050237	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209117_100005916	F002757	AGAAG	MRFANFCILAVLTTTLAASSLYGGEKAVWKPVQFAILRFNDDAPASWNIYHGEKRGMLLVRLWKRYMLVDVKEQEVYEVDPAKVKAQGDNVEWSPSDIPDQPVETSDWKIRDVGPVQRVRFRFGKSGSYLDIQIPLLRNREPAY
Ga0209117_100005938	F050237	N/A	MKPNSKKLGTSPIVWSLAWAFAIIATAFLFKGNPAKDWIEAGLIIGALAIVALKPQRLVCVR
Ga0209117_10000594	F014528	GGAGG	MILTAEHPATNLYRVEVSGWDDSKAFFVENSELEWTDESGKQVTLNRGLSDGAVIFLRLLQPISNDRSHPVAYEAELVARKDEGLRQFRLRPLSSQAGRRMELFR
Ga0209117_100005982	F005761	GGAG	MTPLQRDHIRNDVLPKWKQLPSERQRAIQQRLGVLQNMPESARNRHLNDPNFTRGMSYEDREMLRDLSHQHVGGAPEPPQEQ