NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209117_1000026

Scaffold Ga0209117_1000026


Overview

Basic Information
Taxon OID3300027645 Open in IMG/M
Scaffold IDGa0209117_1000026 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)140339
Total Scaffold Genes122 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)97 (79.51%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009417Metagenome / Metatranscriptome318Y
F027045Metagenome / Metatranscriptome196Y
F033169Metagenome / Metatranscriptome178Y
F083365Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0209117_1000026105F083365GGAGMRNLGILWVLYGILRLVAALGIFLYSGTLTVMWGALLARVPNPFTLMDLFHVFLIFAIILGVASGVVSLMAGLALMSGGQSARKLGLLAAFLAVIDGPLGIALGTYTLVVLVPANPRNA
Ga0209117_1000026114F033169AGGAGMNRRLIGVVVGLMLVALAVVSSPIAFSQMEPTPRVYTFVSQFQVPRANWAAYSEDSEKSVMPLMEKLTADGTIVSWSTFEQVVHTPEGYTHGAAWSSNTISGLMKVLDEIRKNGPRPSQIAATKHEDYLMQTTMYHAGSGTPTYLRVVCSNAKAEKPDAYTAMLKKLLVPTFEQQVKAGAATYYSLDEQYVNNTAPSTRCLVITYPSADGMDKWATAINTTMGKWSAAERAEFAGATVADSRRDIMARITHSGHK
Ga0209117_100002641F009417GAGMAETGSIRDAVRWGLLLAAVAVSGYRLPATIRNFQQWRAALLIDPSAADLYKTNFTVNAVGIVIILCVAVGVFYLLRPRTPKQP
Ga0209117_100002657F027045AGGAGMETTFRYDIVRRESEKAVFWLEGAPELSVAKSRVEKVLSFWPGEYQIFDLQTKQVVLTTSCPERTAMPVSNSAK
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