Scaffold Ga0209117_1000009

Overview

Basic Information

• Taxon OID: 3300027645
• Scaffold ID: Ga0209117_1000009
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 225289
• Total Scaffold Genes: 210
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 158 (75.24%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Associated Families: 15

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000512	Metagenome / Metatranscriptome	1064	Y
F000624	Metagenome / Metatranscriptome	977	Y
F000703	Metagenome / Metatranscriptome	928	Y
F002750	Metagenome / Metatranscriptome	533	Y
F013331	Metagenome / Metatranscriptome	272	Y
F013395	Metagenome / Metatranscriptome	271	Y
F018221	Metagenome / Metatranscriptome	236	Y
F019891	Metagenome / Metatranscriptome	227	Y
F021873	Metagenome / Metatranscriptome	217	Y
F028629	Metagenome / Metatranscriptome	191	Y
F044929	Metagenome / Metatranscriptome	153	Y
F047513	Metagenome	149	Y
F051385	Metagenome	144	Y
F082251	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209117_1000009129	F013331	N/A	VRIGEADNLSGVAGVGEYFLISGEAGIENDFAAAARDRAGRAAVKDAPVFQRENRGSVRNFRQCVLPYPF
Ga0209117_1000009158	F021873	GGAGG	VENPFDIMKVQSDDSLAWLEAAEELSAARLRVWELLADSPGEYIIFNQETKTLVAHFSIHEAPQTPEWWRRDDECLEELQPAVAALDDDYDEYLEELQPAVA
Ga0209117_1000009161	F019891	N/A	MSDWSRDAALRFAAQQEMKRMQDAQVIRDQNDLALNTAKIWTDLCALFRARCAEFNAEPGVAGILSCDTKRTQELKITRSDNAAMLRGAFDAKRHTIHFMGPNIGKEKAEIKIEAVEGSSEMCFVDNLERILNPQDIVDISLTDLLQLN
Ga0209117_100000937	F047513	N/A	MSTIDRHNYTGNVEMFPLEVPLNYKTEPPWEFLLSASRNSLQSYELSRLSHAANLRKEITQLLDSWLEENTAAMLARWLMEQRERPLPPMGNEEQTSACDARGKAAHAVSDNFFADQAGSPPELRTRS
Ga0209117_100000939	F018221	AGGAGG	MGRKRGKRTARRAMPTQRDVLRDVMLAAEKYGAWMTLRELARLTRYGETSISAQLRHLRKTKCGGYVLEKRVRRPEVVNSEEHFVVWEYRLTPRRLKRRRVSARRRVGSRGRSVR
Ga0209117_100000940	F000188	GGAG	MSVKPEMAFDVCWEVYRGAREVLEAKRGMSAMDWKEATKFLWRPDFRPRLAEWVADFALAGQAALDGPDGASRMVMFRLYYLGLAPYENARHFLGLSEQSWVNWSEEVRRRCGKELLRRGMFPPRKYFRGD
Ga0209117_100000942	F044929	GGAGG	MKRTLYLASGISVLFTTLAFGHIMIHNTTHIMSHHDASPVFLIVHTILAVAFGVLSLIGAYFLLTGWRRQSSN
Ga0209117_100000949	F002750	N/A	MRDFLLRLLQGRYVGLLEGEVSRLRAENRALTNSLLGTAGFPPVEYPEPAKPQPLPRLRKRSWHQIQAWKEAESTKQ
Ga0209117_100000956	F013395	GAG	MALLLCGAIAARSKTESLLFVFLRVDHEQDVAILRPMIAPDIGVQLDSGPRKLEPGTVVTCAMLAREHDAIVEGQVGKVGEIVLDCGEHKFVVKTLDFRPQRK
Ga0209117_100000957	F000512	AGG	MIQVLRETHDTPAGVARSLELAGGINRFREPNYRAVWGWNRLAWIGGRFEERDPATGSVLREVVELRQEPKYPAVNRWHIEKWLPPETYGSPQAWWAQTIEVEGGRSIPALGPYPARGEYEHCLTLEGPRGEFVQLTPTIAEHITRAIEWSRRHPRSAGKRALYDRDGRQDRTYDAWAYDLLDDAVPAFHNQPFVTVM
Ga0209117_100000958	F051385	GAGG	MYGYNWLRIASGLALLFSSVMVVAQSLLKNDWGNQLYYGTSLIAVFGYLFLTSRSKEQERDSPWWW
Ga0209117_100000970	F000703	N/A	MLVRDYQESDLAQLRAIHMSQGFDYALPDLNNPLFVTKLVLTQRDASPVVAQHAAPLQRGATQSAGGEESIVGAALLRLTAEAYLLLDPRTGTPRQRWQWLLALHAAAERDAWQRGLEDVHAWLPPPIAKKFGKRLARLGWVRDDAWTPYCKKLQTTE
Ga0209117_100000973	F000624	N/A	MALHGFPWLTTLVPVAVQFVVFLRWLHRRMRNDEITRAFVRDIATNHLPHIYNALQKIAAEQGIELDETPLVQFVDLNHRRRI
Ga0209117_100000986	F028629	GGAGG	VKNLGSLMAAYMIGWGVFFIYFVTVARRTADLRKVVERLKQSLTRGK
Ga0209117_100000995	F082251	GAG	MCCDGCGQPASPEHIARRLQRLEWTTRYRPVHIGTLLLGAVAPQSDSDFIYSPAGPWGGEAKTLLAAAGLNLEEKSVEGALTEFQRGGFFLTHVLECPLEGGGRKRIHEIIANRFPAVLARIRRSLKPKKLAPISLLLEQFLPALTSGELPCAILLDHGEPFDLDADAPSEAAARLRAAVATQGFHASGL