NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209117_1000006

Scaffold Ga0209117_1000006


Overview

Basic Information
Taxon OID3300027645 Open in IMG/M
Scaffold IDGa0209117_1000006 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)254267
Total Scaffold Genes211 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)164 (77.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000207Metagenome / Metatranscriptome1597Y
F001036Metagenome / Metatranscriptome796Y
F012518Metagenome / Metatranscriptome280Y
F014951Metagenome / Metatranscriptome258Y
F031381Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0209117_1000006133F001036GGAGGMKGSLTLLSIVLAGAVFAAMPARANQAAAEKKEASAAKKQTKWQGHVVRIYKDLSQMDIRGGAAPSKDERKIAYDNSTAWTKLGKPGQQDEVKEGSFVIVLGHVDDKGVLHASRIDLRLP
Ga0209117_1000006137F014951GAGMYWGEGSALGLLTFVGYLIFMFGGALVWRGRDEVSVWIQDETCAVRRSFSRYTVVGPFYGPRPESRLKAVPVSFVRSLRRIPRNPISGGMILAFLGPLLVLLDFFV
Ga0209117_100000615F031381GGCGGMKAKPARENPNEEAKPSCEAVSRLDEPCNQSAAIFCDKCERWFCAAHMHDDQWHACQLEPGEEGGEG
Ga0209117_10000068F012518GAGGMFAAMLFAISIVALSQFAAYYWRAMLAGAAAQPVSDRILAAAGVQNGQLSGQDFPALLGLHDLTPELRSGGNGLGLVRLYYALVDGIASQIGRSMPAVAAWSERELAVCARYAAVQIDRRLQANLELAAALRSC
Ga0209117_100000696F000207N/AMKRILASVLTTVLIVAMTLAAMFTLVRTTVYVTSIQSPLQRAVAIAAELLLGVVLLLGTVWLATHLAVRIFGVKESAPPGGSVG
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