Scaffold Ga0209117

Basic Information
Taxon OID	3300027645 Open in IMG/M
Scaffold ID	Ga0209117_1000004 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027645 Open in IMG/M

Scaffold ID

Ga0209117_1000004 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	292026
Total Scaffold Genes	261 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	205 (78.54%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

292026

Total Scaffold Genes

261 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

205 (78.54%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Thunder Bay, Ontario, Canada

Coordinates

Lat. (^o)

49.08

Long. (^o)

-89.38

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000169	Metagenome / Metatranscriptome	1788	Y
F006398	Metagenome / Metatranscriptome	374	Y
F013108	Metagenome / Metatranscriptome	274	Y
F040818	Metagenome / Metatranscriptome	161	Y
F052914	Metagenome / Metatranscriptome	142	Y
F073130	Metagenome	120	Y
F073171	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209117_1000004112	F073171	GGAG	MTRRQTSKRNISSIVGAALLVIGSTVLVTYSAALGWQFQAALNNTAIDSLGFFGSVGLASLHAVRIVALDHAVLLSVMHRILVLCSALIVTLIGIALLLRRPTGVNALGRRGVSALPKGD
Ga0209117_1000004130	F000169	GGAGG	MARKSRLTRVAVGIGTAIGKADRKAHQVARAGLAAKQELEDIAKQVEGLKRQLQKTTKRLKKALS
Ga0209117_1000004184	F040818	AGGAG	MSTNAVPLNSRKSWLLSLDSWAVVAALLAALLIRAGVFTRVPW
Ga0209117_100000420	F013108	AGG	MGSGIIVQYMGFEAKPLTREYTFNVREAGQEREFRLHIANEAFVSHRASYQDAPGICALRLQVELATYSNHPPETRYEISGAELDSYRQARMPKTGRKVRENF
Ga0209117_1000004202	F073130	AGGAG	VLLKSICFSVVSLYLFLRVPMAAGAPPGDACDLPKDLRSEVATKYPGKKVVTLADLQDDDRGFFQKDHNDSCPGLVKVDFYGDGKPTLAMVLIGNGEGKDSSVLVVAHWTGAGWKISTLATGGPTVPVVWSQDPGEYQDVYGQKKIHATEPVVVFCRYESWAILYAWTGGRVAKIWLQD
Ga0209117_1000004256	F006398	N/A	MRYCQTCRLQFDKRGFSRHTLSVFHRKAKLIRAMLERNCITHADIARRIGVTRERVRQLALQMGFADGRSRHAVCRMERRRKEMAEFFVQAQKRGFAVEPLGTTSAYINGKLCVQRKACWHNIGKSEHKYTYVSIRQPAGRFDICAWKLPDGRFLILPKKLTGFRQTTFNPEESEYLGTASSSHYYRQHIERWSLLGRPRRSK
Ga0209117_100000491	F052914	AGGAGG	MLRKFLCSASLAGLMLSGIAAHARPAQEKSQPKQRNEETKSASGKVTDIASDKKSFTIEVSDGNAKHTMQFILDGNTQVQGKVSVGTDATVEFQPTPDGKNLAITITPRSSQSPSPGN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209117_1000004

Overview

Ecosystem & Geography

Associated Families

Sequences