Scaffold Ga0209117_1000002

Overview

Basic Information

• Taxon OID: 3300027645
• Scaffold ID: Ga0209117_1000002
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 346135
• Total Scaffold Genes: 303
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 241 (79.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001069	Metagenome / Metatranscriptome	787	Y
F006644	Metagenome / Metatranscriptome	368	Y
F047504	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209117_1000002183	F047504	AGGAGG	MARQHTTSQSLISIVGAAVVGLGLVILVAKLDGPAAQLMSNLLCAATRTALELLLSAVPAAWQALQAYAFDHQWFSPCPIQTLISFWPLLHVMAGVA
Ga0209117_1000002241	F006644	N/A	MGLMSPAKQSATDAAVELAGRLTEALQRERIVPRFVDSYVVEHGRHGLQVHAALYRDLLALLQREALIAVSVHAMQIVTTDFQPTARSKPRPMVKKDAAAYRRKYLGALARHQKWSMGDALDFQKDFQIYEELIARSASGRRRKPFEAANHPFVDRCAFLLDSSFLEKARVAASRALTSLEELTEQVVSTLM
Ga0209117_1000002255	F001069	GAGG	MQFLPGFTVQCINPQCEARGHWLRADATRAFSEEGRCPCCGDSLRNVPPPLGPRFRMRPRPLTARPPLRPRPR