NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209356_1194037

Scaffold Ga0209356_1194037


Overview

Basic Information
Taxon OID3300027644 Open in IMG/M
Scaffold IDGa0209356_1194037 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)550
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013889Metagenome / Metatranscriptome267Y
F085130Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209356_11940371F085130AGGAGGMNAYYFWFGIFIFVFYLAATDDSVAYAINLVSKFIKFQYEKTKWWLLHNPRNPIVKWLMWRNALRMAKELEKELNK
Ga0209356_11940372F013889AGGAMHSGALRFPHTFNEIKQLDGILHEEDLEGLPVSGLNHMKAREHELPTAWDDSVVSGYYQEDYEK

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