Scaffold Ga0209356_1000934

Overview

Basic Information

• Taxon OID: 3300027644
• Scaffold ID: Ga0209356_1000934
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11621
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039527	Metagenome / Metatranscriptome	163	N
F056556	Metagenome	137	N
F083891	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209356_10009341	F083891	AGGA	MGDTKLERMERMEARMSQSIECPSCRCAVPVALFTSRIGKVRSEAKAKASIANGKKGGAPKGNRNWAGKELPMVGFSAQN
Ga0209356_100093421	F056556	AGGAGG	MKKQIVTVSCQLPEWFEKHSLPRIKDASTRWGADLVVIKPEKPIGLLAKMSLVDAVQNADRTLFVDSDVLISRECVNPFETFPHGHFYACADAPHGDQLHWGRANEMILSQALLGSARWTQGYFNTGVMVCDKQHAGAWANFVYAPFAFPEQTFTNYRARMLGYSIRFLSWEWNAMEINTPKDKKQSDGFMPHAAGIYGDARAKWIEEMDKVLP
Ga0209356_10009345	F039527	N/A	VENVLEETMNYYDDKEEGALTFEQIVPGKYYRYNRDYGICEIMESASNKPKILRYLNRDGGLLGGNGDLFEVDMTDRLLAVLKDRRDKTIAFIDEMGTW