Scaffold Ga0209076

Basic Information
Taxon OID	3300027643 Open in IMG/M
Scaffold ID	Ga0209076_1000525 Open in IMG/M
Source Dataset Name	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6650
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	Eel River Critical Zone Observatory, California, USA
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F013998	Metagenome / Metatranscriptome	266	N
F014491	Metagenome / Metatranscriptome	262	N
F019978	Metagenome	226	N
F055614	Metagenome	138	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

266

Metagenome / Metatranscriptome

262

Metagenome

226

Metagenome

138

Protein ID	Family	RBS	Sequence
Ga0209076_10005252	F055614	N/A	VNSEDDASFEDGFSDQARKKALEMFEHQPVPAAEEFDFGELFARILWEKDWTDKLESVVVKIRNRFRIRDTDTKLSKELKALIPDMREVAKAYDEMTTGYKEFIQTILDAKQSPSSQTRKKIESGKNAKLSNHPARHK
Ga0209076_10005253	F019978	GGAGG	MSEKKRVPPWERAQLSFTLSERRRLRKVEESERPGKARLLDLEENRKRLAEIRKHFCPDCQRYIRSVQLAKEEQKIGEEQGFCKCARNNPKT
Ga0209076_10005254	F013998	GAG	MPLKMHRLLSLLAFVLALIGGVLVVVSALGGLGRPSIVSLAISSLVFLFGLGAILGGWMIYTGIRKLGGIMTLIAGIILFVLTGAAGTSVLLVLAAGVLGLVAAELKPWWAFWR
Ga0209076_10005255	F014491	N/A	LILASLAMFGTIAYTITLQDITNYAITYITGLLISVTGILLGLSGILPISKSLERMKLQVTLTITTLLWLVATIMIALTNGFTFTPSTPLLRYQFLTGVGLFTILVVFYSTSTIEATRQRLLAAQAAKASEMGKTAG

Protein ID

Family

RBS

Sequence

Ga0209076_10005252

N/A

VNSEDDASFEDGFSDQARKKALEMFEHQPVPAAEEFDFGELFARILWEKDWTDKLESVVVKIRNRFRIRDTDTKLSKELKALIPDMREVAKAYDEMTTGYKEFIQTILDAKQSPSSQTRKKIESGKNAKLSNHPARHK

Ga0209076_10005253

GGAGG

MSEKKRVPPWERAQLSFTLSERRRLRKVEESERPGKARLLDLEENRKRLAEIRKHFCPDCQRYIRSVQLAKEEQKIGEEQGFCKCARNNPKT

Ga0209076_10005254

GAG

MPLKMHRLLSLLAFVLALIGGVLVVVSALGGLGRPSIVSLAISSLVFLFGLGAILGGWMIYTGIRKLGGIMTLIAGIILFVLTGAAGTSVLLVLAAGVLGLVAAELKPWWAFWR

Ga0209076_10005255

N/A

LILASLAMFGTIAYTITLQDITNYAITYITGLLISVTGILLGLSGILPISKSLERMKLQVTLTITTLLWLVATIMIALTNGFTFTPSTPLLRYQFLTGVGLFTILVVFYSTSTIEATRQRLLAAQAAKASEMGKTAG

NMPFamsDB