Scaffold Ga0209076_1000383

Overview

Basic Information

• Taxon OID: 3300027643
• Scaffold ID: Ga0209076_1000383
• Source Dataset Name: Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7241
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: Eel River Critical Zone Observatory, California, USA
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004193	Metagenome / Metatranscriptome	449	Y
F026352	Metagenome / Metatranscriptome	198	Y
F032603	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209076_100038312	F032603	AGG	MLLLLASFMVVVPSTGVRAAAGNHFLGRYQSGRDDDSPYGDKEKCEHSKWHVHK
Ga0209076_10003835	F026352	GAGG	METQPEVAEYFRSLELALNEQEKKGTPKGDPTYSRIYTQLARDISQIGIARDELREAAKICGHLSTFERLEHLMKKPVR
Ga0209076_10003836	F004193	N/A	MVERMPSFRVPKARRSNRLVLKRRASLVINLDRKPKRLPCLVLDSSKEGFRLRGSFDLRRGHVVELILDEDPLRPERCSVIWVGKSGTKQEGEVGLETI