Scaffold Ga0209076_1000025

Overview

Basic Information

• Taxon OID: 3300027643
• Scaffold ID: Ga0209076_1000025
• Source Dataset Name: Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19255
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: Eel River Critical Zone Observatory, California, USA
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001816	Metagenome / Metatranscriptome	630	N
F004426	Metagenome	438	N
F013876	Metagenome	267	Y
F014601	Metagenome / Metatranscriptome	261	Y
F025249	Metagenome	202	Y
F028763	Metagenome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209076_100002511	F004426	N/A	VDDELRVSTHKSIIKTLGRQYTDAAQFFVELVVNSWMWGEATKVEIRIPESGSTIEYEEWGNGMDLTGLREFLTKGKLTDEGFSPKYKRPIRESYGMGSLAWLTVGKDLELQVHKGRFDRTITLTESLIDKHWDETDQSTWRPLRLIQAPLDHDGLRIRIRSLTKKPDPVDVRRALLARANVLALRGYGPFEVSVNGELVKPEELRGSTLLPVNIPTEYGKITGEIMIMPISKVRAGISEAGISVQQKHITCLQHQFFGLDQYRTHGLSRIQGWVNADFLRRLPGGNDFEHDSVQWRVFEKAMRGFARNRVHKFLKQTASRRELRSIQYLNREIAERLRRSLRRNVQILSRALVNPRVSPKVKNVPGKTRKEIVLGERRHRKGKKHSREATRSVIHLKDQILAFDVAHGGDRGQAYVETDKSGVRTVFVNMDHPMWYVEAGMTPTKLRYCIRQILERSIAEEILPVSPSTPEETFSTLDALYNDALT
Ga0209076_100002515	F013876	GAG	MSSIDDPLLKELLAALKEDTQHMAADLLGIITTNALIAVFALFLAIATLIRIILFPPRFGPGPGPGLIETTLTFVLFALSVVSIYNLLRLRERYARLQALAEKLGR
Ga0209076_100002516	F001816	GAG	LKMIEVFADKCAKSTLLNGPFGGDDRAFDRLLGPAGILTRTSLVKATMDGRVTYYGRTEAGKIYQQILDTELNFLDPYTGGEVWKK
Ga0209076_10000254	F014601	AGGA	MTGSTGNTGRPSPIPRAVLAGILAGIAAAVISYYVINSILGLIIGFIAGATVGSRTVLLMHKAREQDQ
Ga0209076_10000255	F028763	AGG	MSDPARSKRRIALGAFAIIMGCVSLVGLSSTSYYFGIGLFGGAYGAVMIALGVALIAKKEAVT
Ga0209076_10000256	F025249	GGA	MSSLDSWFNALASENKDGSSGSGARTPPPSVFGIIVVGLLAGLVVGLVVGPNFTLQGFFLGFAGGALITAGLYFYSSERGRPPR