Scaffold Ga0209076_1000001

Overview

Basic Information

• Taxon OID: 3300027643
• Scaffold ID: Ga0209076_1000001
• Source Dataset Name: Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50674
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (76.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: Eel River Critical Zone Observatory, California, USA
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002498	Metagenome / Metatranscriptome	553	Y
F009059	Metagenome / Metatranscriptome	323	Y
F028125	Metagenome	192	N
F104542	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209076_100000114	F104542	N/A	LDSGFFIAVANVGFILFLAESTYADALDTSVSAPVGTALIAIMASSIGFASYLLRSADETDPRRIWRLRRFVSKPPLAFLIFIMAVGVWTAAGFIFSPWSLNKTASGNATYFFYSYQIWYIAASTLLLVSFISLPVISFYRQSKTVQDRKASLSMKIISICWAFFGVLTLFQIAAGGLFLPIAQQIGSVADSLLFVLIAFALREPTILGRIVTSGETVSQAVYANPSIDTIVLYNTESDRRSLVEAFVKDGLATGQDVVFQVAKAEVPFYRAILKASALTDTFLGEHSVTIQPIEGTVAPREINGSLPASVPRERRELIDLDEMDKDRCRDIIDQMTIAGSTPRPKHVGRIWALNVDGAHPGVLDLLQQANPTARVIDLAMQQDTFSSMVNMKHPDILGNRLLLEYEPTSDYEEIVKKFVREFQANVESVAIFTSAGSPIYRQFRDQRNISLFSFSTKTSSPARLSDEQVLLPERDTSLLLDAVDKLLQALSRKRIGIVFDVFTDIILSQGFEKAYGVLSSIVEMTESEIASILVLINYDALEPRILGAVRGLFRSQLRFNFEGLKTIKLQGSRLETSFEDEPLSGVHESSGGIRA
Ga0209076_100000127	F009059	GAG	MERIVEVFEARFGDPYLDPTAELTFEELTAAFPGVPVAELEEGLLHWTSHSGERTLSTKTIENDGYETRVWYIHGLARHQIDPSSPSSRHVALG
Ga0209076_100000152	F028125	AGGAGG	MGSRASMARMPVFLLIGIILLSTPLASDTFPSFQSSAAASPINSPTLNSAAINASMRQVLTWAESRVLPNGTATLQGTSNNLWATSLVGRTLTYLQLEIGNSTTRTIIQNMTKAEHILLQNPSFVSYGIWSPANLNTQFQVHLDAQKFLSRTYGLTLDPTARSDLINVTQNMHLNLPLRSDYFDTVAWTLSNAVWFAHYSGSSLPPASDFTTAVQDLNTNYNLSGATSAAADPLIDFAKLLRFLKPITYTDSYFRLQGNSLSQSYQTLETGLANQLVKRQQSDGNIVTVNPYKSYLVEDFARDLDASVYLHNNLTYAYSAYRAESYLTSRYLQSNGNFSLPDNGEGLYPTGTYHMLSIANDLRSCSSTAWYNILTSSSKLLNYTLTAQYPDGTFRFFLNITNPGNAITTVNTVSGLVDSYLVIHNTNVLSPETPVSLATCQTISSPSLFQNLSWLYIVIPLALVVAVAIAYERKHRTKYHGQVEK
Ga0209076_100000158	F002498	N/A	MRIYLEIQIAFVKAQERIYSLNRGVESLSREEHGLFFDTVQRLGLSNEVKLAAVALYLDFKSRPIGEYNADHKNLDIFLIASVSLAAKAMGDLRTDHEFESRMFVSREKLIDAEERIIRSFGVQDSIIPIPDLVSQLTKRHIESVAEGFATRELVSNSEKMELVQRSYDYLDAAVEKGLNPKMSYRGRAAGVMLKAIQDIGLQISETDIARAAGFDKRSMEINKDVIDDLLKDSKN