NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208827_1027760

Scaffold Ga0208827_1027760


Overview

Basic Information
Taxon OID3300027641 Open in IMG/M
Scaffold IDGa0208827_1027760 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2041
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013913Metagenome267Y
F014639Metagenome261Y
F025336Metagenome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0208827_10277601F014639AGGAGMSETTTLSNTPVSSEAGSDPLFKRKWKSIRFFLDKRAFESKLEGILRAAAGHEGNSLPAGDYEYELLSTEADSICTEFADRWGLDADLVRARIPGLAKLEGLAVPPPTKNYARLACLAMVAIPLAFLLLGAVAGLFNVGFHLVGGR
Ga0208827_10277602F025336AGGAGGMALIALIAAAEATLFSASQAKRYHARRQQVLMGNAVDSLRALPLVDDYLKQKTAGASRVQVFLAAKAAEVCRQAVHTRSFEYLLLHLIRTAIHKRRRKFSISHLGVTL
Ga0208827_10277603F013913GGGGGMTLTPSTKGSFLAGVGLWCLIWAALFKADEIAQAGGFQRWVSSERCLRWIRNHKGTSLIGTELCNYAHTGLDPLGVTFALGGTLVNVIVICLLLPIWERAKRGRTGLTLQR
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