Scaffold Ga0208827_1012435

Overview

Basic Information

• Taxon OID: 3300027641
• Scaffold ID: Ga0208827_1012435
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3240
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026335	Metagenome / Metatranscriptome	198	Y
F066512	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208827_10124352	F066512	AGGA	LKSLEEWVTANCFAKPRAEGWFDALMYYAYKDLRTEQAWTAWERTKADWRHAPPARWPTLEQWTSEVLATRSLAHPGKEKARAVQALGNVEATRLGNAVADSLESRALALWVDSVSKPGQPLDEAVSRELRSRCPRLLPDSRVGPRWVPSLFSRLLRLGESTWRSTARLDGWYAVLRYAIVHHPRYQRLIHYNQRCRDEWSQARPNPYPSFADWLSAADAYCSSRKAAAFGSPLRSG
Ga0208827_10124353	F026335	AGGCGG	MKGRKHGKPRGKSCRWTPELDELLKSAWARGGLRAARRAIRQQQPTWSWYSVKKRAAVLALCRPRAPRWSETEVNHLLWSIDSNASLALIAERLGRTVAGVRKKLRDLGYTAESLGGYKVKEVADMFSVPPARVQYWVSEKLLLTKGGRITDSSLSKFLADYPEKIPFESLRLDMQNWLKEMGYPDRKGEPKAAAFRLEQYASAAESQSANEG