Scaffold Ga0209818_1004827

Overview

Basic Information

• Taxon OID: 3300027637
• Scaffold ID: Ga0209818_1004827
• Source Dataset Name: Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2607
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 41.7655
  • Long. (^o): -111.8143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006445	Metagenome / Metatranscriptome	373	Y
F065097	Metagenome	128	N
F068110	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209818_10048271	F006445	N/A	MKPITTDDLLDQMSRIYERARVEVLTLLRSHEPAGHSVMPPREWMSATQLAEYWQLYNENDEPTTAGILKWAKRPADKFPLPHAYMGDLLRFNRDEVDQWARQE
Ga0209818_10048272	F068110	GGGGG	MHTTDKNTVLEPRAAMMARLLPIHDDAAGEGTDEGAMIVTFEGYISGIPEFFTNDCHEAFRFKDREQAESFVAEFADALLNPQVLHHP
Ga0209818_10048273	F065097	AGGAG	MPDHPNTDYENESGSLDAEDWEIALKPYAGYPDAALDLARNLMTIRECLKTTPPDVPTAVAALNEAADSLFPLTSFHKGAHGLYRTYIEGRATRAHEALMQSLGVKF