Scaffold Ga0209818_1000054

Overview

Basic Information

• Taxon OID: 3300027637
• Scaffold ID: Ga0209818_1000054
• Source Dataset Name: Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28740
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (72.41%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 41.7655
  • Long. (^o): -111.8143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006814	Metagenome / Metatranscriptome	364	Y
F022439	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209818_100005427	F022439	AGCAGG	MKPLKVVILAALMSVMGHAQERSMAEATYALKGPVRTFRVEVATFVSKDGDYAEGRRVAQMEASFNLDGNRTDLHIYNDKGVVSRRIVMKFDGRKMTEAINYDGAGRMWLRTVDVYDDKSLLKEELTYNGNGSLRSKKTFKRDELGQAIEVSEYNAQGVLLDQFKNTFDGSILLTSERKVYRENGSLASINFYEATKRRTETTTYQSDGSIANKTVRTAQQLEQYGPDGSLQKTGTISIEHRLLDEVVLNKDGSTKKEWNAPDQLDAHGNWTKLTRWHTDSQGTRPLSVSYRMLTYY
Ga0209818_10000546	F006814	AGGAG	MKTTQIQDPFHNPFHNRFHVPVHSRLDEMQAYTHMVWLNDPPPSDQETENHGARPWGRALAGAFALLFVVFSAAWLSSAFGN