Scaffold Ga0209625_1001346

Overview

Basic Information

• Taxon OID: 3300027635
• Scaffold ID: Ga0209625_1001346
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5811
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029226	Metagenome	189	N
F045330	Metagenome / Metatranscriptome	153	N
F057631	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209625_100134611	F057631	AGG	MPEDNQGSAPADSRYRALLDVSAALVEQPTVKAVLHSLREVLSSSVRLHGTDLYLLDSGRDTLHLLEF
Ga0209625_10013462	F029226	GAGG	MSEQKEKDLFPQNARLAQLSDSLYGSPSELESREARELLRRAGIDPEEVKACLYRRFDALAKECAAAGRPVPALLKQALSDLRPGVSGSPKERTLVREARAAIRSVIDHAQRMQERLARLPRVTLATAYRNKKELSERDKKLLDDLAEDLLKRNNRSRPKDGR
Ga0209625_10013463	F045330	GAGG	LEAQQSLDFEELAHRLTAFGLRTFNEFGLGGRDSSVAGVGLSVDDFVSAVLVEYVEGKLQHQASRGDLFSLLATALRNDIIDSLRKAAHAHEESRSPLPAQRDADAAPLSLDELPGSAIDFAASIDEERYGERARTAFAGEPELAEVVRAVLELNLYKPREIAAELGITAAEVQNRKKRLQRQLIDHNLVERKTA