Scaffold Ga0209625_1000302

Overview

Basic Information

• Taxon OID: 3300027635
• Scaffold ID: Ga0209625_1000302
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12638
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001078	Metagenome / Metatranscriptome	785	Y
F011185	Metagenome / Metatranscriptome	294	Y
F097841	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209625_100030212	F097841	N/A	MTEKELCELAELLAELEQSLLRLKVTKDLERRRLLLCKVSRLFAEIERNPIAPK
Ga0209625_10003024	F011185	GGAGG	MPRSLSFAIILALFAAFSAAARSQDASAPAPPAPSQDSTPPAETKKPKKVWTNENLSGANGAVSVVGDPKNKPKPASSKPANAQYVASVRKQLDKLQGEVAGIDKQLVDLKNFSEGEPSTSASGIKLNKSYEREPIEVQMRALQDKKKDLESKIDALLDEARKKGVESSELR
Ga0209625_10003025	F001078	N/A	MLKRAFISVAVLCLAFAADSAAQSVVPDSTPAIGPVRPDFFNRVIANQKKAEAALDLYERIERVETRKNLNDPAPPAIKILRVVPSGTGMFRIPVGEDGKPKDSAAYRADLESLARVLTQLVNDAGSQRDALEKYAKKKKDRNDLIDATHNAFLFTFAAYEPRGDRVLSKYKMEPNPSFKPTSRFSAIFLKVRGFVWVDEASGELARVEGNVTEDISVGLFLGKIYKGSHFMQERYEFQPGLWLASFSQYDFDGRKLFSSFSVHERTFYSSYRYIGPPKEALAAIRQELGLAESDKQRTDTADR