NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209905_1006243

Scaffold Ga0209905_1006243


Overview

Basic Information
Taxon OID3300027634 Open in IMG/M
Scaffold IDGa0209905_1006243 Open in IMG/M
Source Dataset NameThawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812S1M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1436
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost → Thawing Permafrost Microbial Communities From The Arctic, Studying Carbon Transformations

Source Dataset Sampling Location
Location NameSweden: Kiruna
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057830Metagenome135N
F065360Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0209905_10062431F057830AGGMFNSLLLDSNDSVIADRLSRLQDSLRGLTLSTREEYQAAVYSMVNTVLNLGDNMQTLTQIRSKPAIVGDLSQNLTLLNQDSNDIAAEILRIENSAGDLYNLAAASQNALRQLIRQSIYISNQQQFLAPFIDDSVLQPGYTATLDYNAGLATLPLGTQTLLSPTFSIGIGSSGSAVNAISNLSSTTVGTSFQWSGSSLEMLLRCV
Ga0209905_10062432F065360N/AASQLMAAFNVLWNQGCLLYTSTALHLDETLGTNPLVSKAFLTFYQPNYSLKQQTVTPPDALRLNVMSQLQAVLPFNARNVVPPPAVVYTGAQYEFGVADVSGESWTALSGVFVSGPVRFVGIPELIRFDADFMAGSSGTAYTASTSNTVNKIASALNSEGVLASLVGFSWAMSNDTSGQAVDFYLCFQAFDNTGTVIKQNLTGYLLPQGGSGQCFSFTYPFINGWTTGSGALSSVDHVDFYIKIVHRQASAIVQRYMLQVTGQ

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