NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209432_1164270

Scaffold Ga0209432_1164270


Overview

Basic Information
Taxon OID3300027630 Open in IMG/M
Scaffold IDGa0209432_1164270 Open in IMG/M
Source Dataset NameMarine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_800m (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)636
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)8.0Long. (o)-156.0Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010693Metagenome300Y
F081449Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0209432_11642701F081449N/AVKIELYKVDPYKIWWIGEKTFTSRGQEETFLRFTIDPEGKRVGDFTYIGKDFVTPFGNAYIAPAGSDEPTGASSFEDREFEDRNGGR
Ga0209432_11642702F010693GGAGGMIGLLIFGLVVLSTICLWILIEERKSWKFLVWFIPILLVIVTSTYVTYTSILGFPKFGTPEKGMYLRHYIDEPNWIYLWVLSKKNVPMSYQLVYTRKKHDALEGVKGKAEEGKFMVLSEDAL

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