Scaffold Ga0208942_1061870

Overview

Basic Information

• Taxon OID: 3300027627
• Scaffold ID: Ga0208942_1061870
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1124
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032579	Metagenome / Metatranscriptome	179	N
F079979	Metagenome	115	Y
F099184	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208942_10618701	F032579	N/A	QLPALICTLGVVGTSMAVAPVKNRYGRADANAQLLAWLAFNPEYMFMDDIPENGG
Ga0208942_10618702	F079979	GGTGG	MIREEEDDMSQEMRAFIVLGVKREVANLIKKIQDAKVPVTDEWTDGLNSGLAWAVRILNKDKSAS
Ga0208942_10618703	F099184	GAG	VVEIRLTQREIDFSLAFVYAMRSDKKEHNVIDKKFDSKNTSWAVNLMGHLGEKAVAKVYEVEVDDRVLTGGDEGYDLVIKNKTVQVKTTTTDQLIFNSKELFSADYAILVTLVGDRTQPHINSHFIVWGDISKDKFIDVCFEKDFGYGVRYVCNKEDLGQELRGIDDTQPRLH